B C E F G I P R S U Z

B

BaseApplet - Class in com.metamolecular.chemwriter.applet

The base class for ChemWriter™ applets.

C

canRedo() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Returns true if the last user action can be redone or false otherwise.

canUndo() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Returns true if the last user action can be undone or false otherwise.

clear() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Clears the molecule without changing any settings.

clearAtomColors() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

clearAtomColors() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Clears all atom coloring, making all atoms appear in the bond color.

com.metamolecular.chemwriter.applet - package com.metamolecular.chemwriter.applet

com.metamolecular.chemwriter.paint - package com.metamolecular.chemwriter.paint

copyStyle(PaintStyler) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

copyStyle(PaintStyler) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Copies all settings from styler to this PaintStyler.

E

EditorApplet - Class in com.metamolecular.chemwriter.applet

A 2D structure editor applet.

EditorApplet() - Constructor for class com.metamolecular.chemwriter.applet.EditorApplet

Default constructor.

F

flash(String) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

Display message as a JOptionPane.

G

getAppletInfo() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

Returns version number, copyright notice, and license status.

getAtomColor(String) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getAtomColor(String) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns the color for atoms of atomic symbol atomSymbol.

getAtomLabelFont() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getAtomLabelFont() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns the name of the font being used to render atom labels.

getAtomLabelFonts() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getAtomLabelFonts() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns an array containing the names of the fonts that can be used for Atom labels.

getAtomLabelHeight() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getAtomLabelHeight() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns the atom label height, as a ratio of the median bond length.

getBackgroundColor() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getBackgroundColor() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns the background color.

getBondColor() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getBondColor() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns the bond color.

getBondLength() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Returns the bond length for new bonds, in molecule units.

getBorderWidth() - Method in class com.metamolecular.chemwriter.applet.PainterApplet

Returns the width of the invisible border around this PainterApplet.

getCapStyle() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getCapStyle() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns the line cap style.

getColoredAtoms() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getColoredAtoms() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns an array of atom labels that this PaintStyler will color.

getDocumentHeight() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Returns the height of the document in pixels.

getDocumentWidth() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Returns the width of the document in pixels.

getHoverRadius() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Returns the hover radius, or the radius around which atoms will be detected as being hovered over by the mouse cursor.

getLineEndPadding() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getLineEndPadding() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns the end line padding.

getLineOffset() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getLineOffset() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns the multiple bond line offset as a ratio of the median bond length.

getLineWidth() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getLineWidth() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns the line width, as a ratio of the median bond length.

getMolfile() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

Returns the molfile representation of the molecule contained in this applet.

getMolfile() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

getMolfile() - Method in class com.metamolecular.chemwriter.applet.PainterApplet

getParameterInfo() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getStereoWidth() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

getStereoWidth() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns the maximum width of a stereo bond, as a ratio of the bond length.

getTool() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Returns the name of the active tool.

getZoomFactor() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Returns the zoom factor to be applied by zoomIn and zoomOut.

I

init() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

init() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

init() - Method in class com.metamolecular.chemwriter.applet.PainterApplet

isAntialiasing() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

isAntialiasing() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns true if antialiasing is activated or false otherwise.

isAtomColoringEnabled() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

isAtomColoringEnabled() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns true if atom coloring is enabled, or false otherwise.

isBlank() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

Returns true if this applet's canvas contains no molecule, or false otherwise.

isBlank() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

isBlank() - Method in class com.metamolecular.chemwriter.applet.PainterApplet

isCarbonVisible() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

isCarbonVisible() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns true if carbon atoms and their associated virutal hydrogens are rendered or false otherwise.

isPreventStrayHeteroatoms() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Returns true if stray heteroatom protection is enabled, or false otherwise.

isRenderVirtualHydrogens() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

isRenderVirtualHydrogens() - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Returns true if heteroatom virtual hydrogens are rendered or false otherwise.

isVirtualizeHydrogens() - Method in class com.metamolecular.chemwriter.applet.BaseApplet

Returns true if this applet virtualized hydrogen atoms from molfile input, or false otherwise.

P

paint(Graphics) - Method in class com.metamolecular.chemwriter.applet.EditorApplet

PainterApplet - Class in com.metamolecular.chemwriter.applet

A 2D structure rendering applet.

PainterApplet() - Constructor for class com.metamolecular.chemwriter.applet.PainterApplet

Default constructor.

PaintStyler - Interface in com.metamolecular.chemwriter.paint

Unified paint settings management.

R

redo() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Redoes the last user action, or does nothing if there is nothing to redo.

resetView() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Resets the editor view by scaling to the default scale and centering the molecule to the extent possible.

S

setAntialiasing(boolean) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setAntialiasing(boolean) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Determines whether antialiasing is used.

setAtomColor(String, Color) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setAtomColor(String, int, int, int) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setAtomColor(String, Color) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets the color for atoms of atomic symbol atomicSymbol to color

setAtomColor(String, int, int, int) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets the color for atoms of atomic symbol atomicSymbol to the color represented by the values red, green, and blue.

setAtomColoringEnabled(boolean) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setAtomColoringEnabled(boolean) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Turns atom coloring on and off.

setAtomLabelFont(String) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setAtomLabelFont(String) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets the name of the font being used to render atom labels.

setAtomLabelHeight(double) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setAtomLabelHeight(double) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets the atom label height, as a ratio of the median bond length.

setBackgroundColor(Color) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setBackgroundColor(int, int, int) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setBackgroundColor(Color) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets the background color to color.

setBackgroundColor(int, int, int) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets the background color to that represented by the red green, and blue values.

setBondColor(Color) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setBondColor(int, int, int) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setBondColor(Color) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets the bond color to color.

setBondColor(int, int, int) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets the bond color to that represented by the red, green, and blue values.

setBondLength(double) - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Sets the bond length for new bonds, in molecule units.

setBorderWidth(int) - Method in class com.metamolecular.chemwriter.applet.PainterApplet

Places an invisible border around this PainterApplet with the indicated width.

setCapStyle(String) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setCapStyle(String) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets the line cap style: "square", "round", or "none".

setCarbonVisible(boolean) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setCarbonVisible(boolean) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Determines whether carbon atoms and their associated virtual hydrogens will be rendered.

setDocumentSize(int, int) - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Resizes the document.

setHoverRadius(double) - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Sets the hover radius, or the radius around which atoms will be detected as being hovered over by the mouse cursor.

setLineEndPadding(double) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setLineEndPadding(double) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets line end padding to padding.

setLineOffset(double) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setLineOffset(double) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets the multiple bond line offset, as a ratio of the bond length.

setLineWidth(double) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setLineWidth(double) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets the line width, as a ratio of the median bond length.

setMolfile(String) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

Replaces the current molecule with one defined by molfile.

setMolfile(String) - Method in class com.metamolecular.chemwriter.applet.EditorApplet

setMolfile(String) - Method in class com.metamolecular.chemwriter.applet.PainterApplet

setPreventStrayHeteroatoms(boolean) - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Determines whether stray heteroatom protection will be enabled or not.

setRenderVirtualHydrogens(boolean) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setRenderVirtualHydrogens(boolean) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Determines whether heteroatom virtual hydrogens will be rendered.

setStereoWidth(double) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

setStereoWidth(double) - Method in interface com.metamolecular.chemwriter.paint.PaintStyler

Sets the maximum width of a stereo bond, as a ratio of the bond length.

setTool(String) - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Selects the drawing tool to be used.

setVirtualizeHydrogens(boolean) - Method in class com.metamolecular.chemwriter.applet.BaseApplet

Removes hydrogens from non-stereogenic carbons and non-metallic heteroatoms for all molfile input.

setZoomFactor(double) - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Sets the zoom factor to be applied by zoomIn and zoomOut.

start() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

stop() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

U

undo() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Performs an undo of the last user action, or does nothing if the undo limit has been reached.

Z

zoomIn() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Magnifies the molecule display by the value returned by getZoomFactor.

zoomOut() - Method in class com.metamolecular.chemwriter.applet.EditorApplet

Reduces the molecule display by the value returned by getZoomFactor.

B C E F G I P R S U Z